PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000184743
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 612aa    MW: 69022.4 Da    PI: 7.8776
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000184743genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.15.5e-33193307189
            TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec 73 
                    a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++                               
  MDP0000184743 193 ATGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELEELpswnphsisttaavpametqnpsA------- 281
                    589**************************************************************655554443333333333322220....... PP

            TCP  74 eaesssssasnsssg........................k 89 
                                  +                        +
  MDP0000184743 282 --------------TgihcfaavdaigsanrrtmvgsgvS 307
                    ..............13335555555554333333322110 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-28194320IPR005333Transcription factor, TCP
PROSITE profilePS5136933.273196254IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MELKTLNGRT FWEKQKQKKQ KQLQGSEGRW QHKHQEENHK GLTLDPQRXH HHHYLHQNPI  60
LNFNHLVQEE EEEETQQQTQ QNHHQAFNFP YLHQDPHTQQ HFFGETRQLQ LQEQQQTQQR  120
APKKRSFTSS SSSTLVEQSI EYARSKMGDS HHHHLNNHQA TTSSRLGIRP PSSGGGVSTD  180
IVEXVRGSHI VRATGRKDRH SKVCTAKGPR DRRVRLAAHT AIQFYDVQDR LGYDRPSKAV  240
DWLIKKAKAA IDELEELPSW NPHSISTTAA VPAMETQNPS ATGIHCFAAV DAIGSANRRT  300
MVGSGVSEQQ FAQNPNSNST FLPPSLDSDA IADTIKSFFP MGASAAAAAA ESPSSTIQFH  360
QNYPPDLLSK ASSQSQDLRL SLQSFQDPIL LHHHDAQNQH HHAQTHQNEQ TLFSGSQNQL  420
GFDGSPGSWA EHHHNQQQQE MNRFQRMVAW DSGGNGGPSS AGGFIFNSLL PTQQGSTSPL  480
QQQQPSLFGQ SQFFSQRGPL QSSNSPSVRA WMVDQQNQQS ISHDHHHQIS QSIHHQQSIS  540
GMGFASGGGF SGFHIPARIH GEEEHDGLKL SSHLCLPQRD YKSYLLVSNS YMARRRFFGR  600
FVQWRAPWEE EI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.303430.0bud| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5310220.0AB531022.1 Malus x domestica MdTCP4B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008382081.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR51e-100TCP4_ARATH; Transcription factor TCP4
TrEMBLD5MRQ30.0D5MRQ3_MALDO; MdTCP4B protein
STRINGPOPTR_0001s38480.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-66TCP family protein